PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00116.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 321aa    MW: 37354.7 Da    PI: 6.702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00116.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5371351128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPt+eelv +yLk+k+++ k++l +vi+++d+y++ePwd++      ++e++ewyfFs++d+ky+tg+r+nrat++g+W
  Sme2.5_00116.1_g00009.1   7 VPPGFRFHPTEEELVGYYLKRKINSLKIDL-DVITDIDLYRMEPWDIQDrckLGYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFW 91 
                              69****************************.9***************952432234677*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              katg+dk+vls k++ +g++ktLvfykgrap+g+k+dW+mheyrl
  Sme2.5_00116.1_g00009.1  92 KATGRDKAVLS-KDKIIGMRKTLVFYKGRAPNGRKSDWIMHEYRL 135
                              ***********.8899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-605156IPR003441NAC domain
PROSITE profilePS5100558.457156IPR003441NAC domain
PfamPF023651.8E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEMDSCVPPG FRFHPTEEEL VGYYLKRKIN SLKIDLDVIT DIDLYRMEPW DIQDRCKLGY  60
EEQNEWYFFS HKDRKYPTGT RTNRATAAGF WKATGRDKAV LSKDKIIGMR KTLVFYKGRA  120
PNGRKSDWIM HEYRLQSSEH APPQEEGWVV CRAFKKPSPN KQPNLNAWHN AYYIRGANTS  180
NYRPNSSLSE ITRTPMHHQP LNNINAFNQT TNFHQLAFHP SHQNMIINMS STQNFFENQV  240
LVELPQLDSP TISTSFCTKD NISLGEQSYT VNYNNEDDHG DEEKQSNGIN NNQIYGDWKN  300
IDTLIEPPSH ISHLLECFPD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48215610168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869361e-158JQ686936.1 Nicotiana tabacum cultivar SR1 NAC domain-containing protein 7 (VND7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353705.10.0PREDICTED: NAC domain-containing protein 30-like
SwissprotQ9C8W91e-117NAC30_ARATH; NAC domain-containing protein 30
TrEMBLM1CGN50.0M1CGN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000670860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-107vascular related NAC-domain protein 7